Back to the original Center-flare topic... I have experienced this myself, see below. 5DMkII, 24-70 f2.8 L lens @ 70mm with Hoya Pro UV filter on.

Click <
here> for full-size image with Exif data.
As you can see, it's very obvious in the JPG, but not at all present through the viewfinder.
I am also getting other sorts of problems with 'something' in the picture, I'll post separately on that, as it looks like a reflection of something inside the camera.